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Selected Recent Publications by MCB Students

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Papers published by MCB graduate students in Neuro labs:

*Shelly, M., *Lim, B.K., Cancedda L., Heilshorn, S.C., Gao H., Poo M-m. (2010) Local and long-range reciprocal regulation of cAMP and cGMP in axon/dendrite formation. Science. 327: 547-52.  (* equal contribution)

Caporale N*, Kolstad KD*, Lee T, Tochitsky I, Dalkara D, Trauner D, Kramer R, Dan Y, Isacoff EY, Flannery JG.  (2011) LiGluR restores visual responses in rodent models of inherited blindness., Mol Ther. 19(7):1212-9.  *co-first

Fischler W, Kong P, Marella S, Scott K. (2007) The detection of carbonation by the Drosophila gustatory system. Nature. Aug 30;448(7157):1054-7.

Klimczak RR, Koerber JT, Dalkara D, Flannery JG, Schaffer DV.  (2009)  A novel adeno-associated viral variant for efficient and selective intravitreal transduction of rat Müller cells; PLoS One, 4(10).

Scolnick, J.A., K. Cui, S. Xuan, C.D. Duggan, X.-b Yuan, A. Efstratiadis, and J. Ngai.  (2008)  Role of IGF signaling in olfactory sensory map formation and axon guidance.  Neuron 57, 847-857.

Wilson, SR, Gerhold, KA, Bifolck-Fisher, A, Liu, Q, Patel, K, Dong, X. Bautista DM. (2011) TRPA1 is required for histamine-independent, Mas-related G- protein coupled receptor-mediated itch Nature Neuroscience, 14(5):595-602.
Lee H, Dean, C, Isacoff EY. (2010) Alternative splicing of neuroligin regulates the rate of presynaptic differentiation. J Neurosci. 30(34):11435-46.

Papers published by MCB graduate students in IMP labs:

Nice TJ, Coscoy L, Raulet DH.  (2009) Posttranslational regulation of the NKG2D ligand Mult1 in response to cell stress.  J Exp Med. Feb 16;206(2):287-98. Epub Jan 26.

Osborn SL, Diehl G, Han SJ, Xue L, Kurd N, Hsieh K, Cado D, Robey EA, Winoto A. (2010) Fas-associated death domain (FADD) is a negative regulator of T-cell receptor-mediated necroptosis.  Proc Natl Acad Sci U S A. Jul 20;107(29):13034-9. Epub Jul 6.

Kofoed EM, Vance RE. (2011) Innate immune recognition of bacterial ligands by NAIPs determines inflammasome specificity.  Nature. Aug 28;477(7366):592-5. doi: 10.1038/nature10394.

Ewald SE, Lee BL, Lau L, Wickliffe KE, Shi GP, Chapman HA, Barton GM. (2008)  The ectodomain of Toll-like receptor 9 is cleaved to generate a functional receptor.  Nature. Dec 4;456(7222):658-62. Epub Sep 28.

Crimmins GT, Herskovits AA, Rehder K, Sivick KE, Lauer P, Dubensky TW Jr, Portnoy DA. (2008) Listeria monocytogenes multidrug resistance transporters activate a cytosolic surveillance pathway of innate immunity.  Proc Natl Acad Sci U S A. Jul 22;105(29):10191-6. Epub Jul 16.

Cadwell K, Coscoy L. (2005) Ubiquitination on nonlysine residues by a viral E3 ubiquitin ligase.  Science. Jul 1;309(5731):127-30. Erratum in: Science. (2006) Jan 13;311(5758):177.

Hammer GE, Gonzalez F, James E, Nolla H, Shastri N. (2007) In the absence of aminopeptidase ERAAP, MHC class I molecules present many unstable and highly immunogenic peptides.  Nat Immunol. Jan;8(1):101-8. Epub (2006) Nov 26.

Papers published by MCB graduate students in GGD labs:

Abedin M, King N. (2008)  The premetazoan ancestry of cadherins.  Science. Feb 15;319(5865):946-8.

Cameron, P., M. Hiroi, J. Ngai, and K. Scott.  (2010)  The molecular basis for water taste in Drosophila.  Nature 465, 91-96.

Stolfi A, Gainous TB, Young JJ, Mori A, Levine M, Christiaen L. (2010)  Early chordate origins of the vertebrate second heart field.  Science. Jul 30;329(5991):565-8.

Mets DG, Meyer BJ. (2009)  Condensins regulate meiotic DNA break distribution, thus crossover frequency, by controlling chromosome structure.  Cell. Oct 2;139(1):73-86. Epub Sep 24

Liu Z, Scannell DR, Eisen MB, Tjian R.  (2011) Control of embryonic stem cell lineage commitment by core promoter factor, TAF3.  Cell. 146:720-731.

Osborne EA, Dudoit S, Rine J. (2009)  The establishment of gene silencing at single-cell resolution.  Nat Genet. Jul;41(7):800-6. Epub Jun 21.

Sabogal A, Lyubimov AY, Corn JE, Berger JM, Rio DC. (2010) HAP proteins target specific DNA sites through bipartite recognition of adjacent major and minor grooves.  Nat Struct Mol Biol. Jan;17(1):117-23. Epub (2009) Dec 13.

Young JJ, Cherone JM, Doyon Y, Ankoudinova I, Faraji FM, Lee AH, Ngo C, Guschin DY, Paschon DE, Miller JC, Zhang L, Rebar EJ, Gregory PD, Urnov FD, Harland RM, Zeitler B.  (2011)  Efficient targeted gene disruption in the soma and germ line of the frog Xenopus tropicalis using engineered zinc-finger nucleases. Proc Natl Acad Sci U S A. 108:7052-7057.

Papers published by MCB graduate students in BBS labs

Dunkle, JA, Wang, L, Feldman, MB., Pulk, A, Chen, VB, Kapral, GJ, Noeske, J, Richardson, JS, Blanchard, SC and Cate, JHD. (2011) Structures of the bacterial ribosome in classical and hybrid states of tRNA binding.  Science 332, 981-984.  PMID:  21596992, PMCID: PMC3176341.

Schmidt BH, Burgin AB, Deweese JE, Osheroff N, Berger JM. (2010) A novel and unified two-metal mechanism for DNA cleavage by type II and IA topoisomerases. Nature 465, 641-4.

Thomsen ND and Berger JM (2009) Running in reverse: the structural basis for translocation polarity in hexameric helicases. Cell, 139, 523-534

Chao LH, Stratton MM, Lee IH, Rosenberg OS, Levitz J, Mandell DJ, Kortemme T, Groves JT, Schulman H, Kuriyan J. (2011) A mechanism for tunable autoinhibition in the structure of a human Ca2+/calmodulin- dependent kinase II holoenzyme.
Cell 146, 732-45.

Wickliffe KE, Lorenz S, Wemmer DE, Kuriyan J, Rape M. (2011) The mechanism of linkage-specific ubiquitin chain elongation by a single-subunit E2.
Cell 144, 769-81.

Haurwitz RE, Jinek M, Wiedenheft B, Zhou K, Doudna JA. (2010) Sequence- and structure-specific RNA processing by a CRISPR endonuclease.
Science 329, 1355-8.

Garcia, G.III, Bertin, A., Li, Z., McMurray, M., Thorner, J. and Nogales, E. (2011) Subunit-dependent modulation of septin assembly: budding yeast septin Shs1 promotes ring and gauze formation. J.Cell Biol., in press.

Patterson JC, Klimenko ES, Thorner J (2010) Single-cell analysis reveals that insulation maintains signaling specificity between two yeast MAPK pathways with common components. Science Signaling 3: ra75

Shank EA, Cecconi C, Dill JW, Marqusee S, Bustamante C. (2010) The folding cooperativity of a protein is controlled by its chain topology. Nature 465, 637-40

Papers published by MCB graduate students in CDB labs

Haigo SL, Bilder D. (2011)  Global tissue revolutions in a morphogenetic movement controlling elongation.  Science. Feb 25;331(6020):1071-4. Epub 2011 Jan 6.

Olive V, Bennett MJ, Walker JC, Ma C, Jiang I, Cordon-Cardo C, Li QJ, Lowe SW, Hannon GJ, He L. (2009) miR-19 is a key oncogenic component of mir-17-92.  Genes Dev. Dec 15;23(24):2839-49.

Fritz-Laylin LK, Prochnik SE, Ginger ML, Dacks JB, Carpenter ML, Field MC, Kuo A, Paredez A, Chapman J, Pham J, Shu S, Neupane R, Cipriano M, Mancuso J, Tu H, Salamov A, Lindquist E, Shapiro H, Lucas S, Grigoriev IV, Cande WZ, Fulton C, Rokhsar DS, Dawson SC. (2010) The genome of Naegleria gruberi illuminates early eukaryotic versatility.  Cell. Mar 5;140(5):631-42.

Merte, J*, Jensen, D*, Wright, K, Sarsfield, S, Wang, Y, Schekman, R, Ginty, D D.   (2009) Sec24b selectively sorts Vang12 to regulate planar cell polarity during neural tube closure.  Nature Cell Biol. (published online December 6, 2009).  

Haglund CM, Choe JE, Skau CT, Kovar DR, Welch MD. (2010) Rickettsia Sca2 is a
bacterial formin-like mediator of actin-based motility. Nat Cell Biol. Nov;12(11):1057-63. Epub 2010 Oct 24. PubMed PMID: 20972427; PubMed Central PMCID: PMC3136050.

Carroll JS, Munchel SE, Weis K. (2011) The DExD/H box ATPase Dhh1 functions in
translational repression, mRNA decay, and processing body dynamics. J Cell Biol.
Aug 22;194(4):527-37. Epub Aug 15. PubMed PMID: 21844211; PubMed Central PMCID: PMC3160580.

Phillips CM, Meng X, Zhang L, Chretien JH, Urnov FD, Dernburg AF. (2009)    Identification of chromosome sequence motifs that mediate meiotic pairing and synapsis in C. elegans. Nat Cell Biol. Aug;11(8):934-42.