A Selection of Papers from each Division

A selection of papers published by MCB graduate students in Neuro labs:

Carroll ECBerlin SLevitz J, Kienzler MAYuan Zet al. (2015) Two-photon brightness of azobenzene photoswitches designed for glutamate receptor optogeneticsProceedings of the National Academy of Sciences of the United States of America. 112(7):E776-85.

Friedman DHoagland ABerlin S, Isacoff EY. (2015) A spinal opsin controls early neural activity and drives a behavioral light responseCurrent biology:CB. 25(1):69-74.

Hamby AM, Rosa JM, Hsu CH, Feller MB. (2015) CaV3.2 KO mice have altered retinal waves but normal direction selectivity. Visual Neuroscience.   32:E003

Morrie RD, Feller MB. (2015) An Asymmetric Increase in Inhibitory Synapse Number Underlies the Development of a Direction Selective Circuit in the Retina. The Journal of neuroscience : the official journal of the Society for Neuroscience. 35(25):9281-6.

A selection of papers published by MCB graduate students in IMP labs:

Chavarría-Smith J, Vance RE. (2015) The NLRP1 inflammasomes . Immunological reviews. 265(1):22-34.

Gowen BG, Chim B, Marceau CDGreene TT, Burr P, et al. (2015) A forward genetic screen reveals novel independent regulators of ULBP1, an activating ligand for natural killer cells. eLife. 4.

Newman ZR, Young ZJ, Ignolia N, Barton GM. (2016) Differences in codon bias and GC content contribute to the balanced expression of TLR7 and TLR9. Proceedings of the National Academy of Sciences of the United States of America.

A selection of papers published by MCB graduate students in GGD labs:

Chien SCGurling MKim CCraft TForrester Wet al. (2015) Autonomous and nonautonomous regulation of Wnt-mediated neuronal polarity by the C. elegans Ror kinase CAM-1Developmental biology. 404(1):55-65.

Crane E, Bian Q, McCord RP, Lajoie BR, Wheeler BS, et al. (2015) Condensin-driven remodelling of X chromosome topology during dosage compensation. Nature. 523(7559):240-4.

Dodson AE, Rine J. (2015) Heritable capture of heterochromatin dynamics in Saccharomyces cerevisiae. eLife. 4:e05007.

Ellahi A, Thurtle DM, Rine J. (2015) The Chromatin and Transcriptional Landscape of Native Saccharomyces cerevisiae Telomeres and Subtelomeric Domains. Genetics. 200(2):505-21.

Ellis NA, Glazer AM, Donde NN, Cleves PA, Agoglia RM, et al. (2015) Distinct developmental genetic mechanisms underlie convergently evolved tooth gain in sticklebacks. Development (Cambridge, England). 142(14):2442-51.

Erickson PA, Cleves PA, Ellis NA, Schwalbach KT, Hart JC, et al. (2015) A 190 base pair, TGF-β responsive tooth and fin enhancer is required for stickleback Bmp6 expression. Developmental biology. 401(2):310-23.

Glazer AM, Killingbeck EE, Mitros T, Rokhsar DS, Miller CT. (2015) Genome Assembly Improvement and Mapping Convergently Evolved Skeletal Traits in Sticklebacks with Genotyping-by-Sequencing. G3(Bethesda, Md.). 5(7):1463-72

Krefman NI, Drubin DG, Barnes G. (2016) Control of the spindle checkpoint by lateral kinetochore attachment and limited Mad1 recruitment. Mol Biol Cell. 26(14):2620-39.

Lombardi LM, Davis MD, Rine J. (2015) Maintenance of nucleosomal balance in cis by conserved AAA-ATPase Yta7. Genetics. 199(1):105-16.

A selection of papers published by MCB graduate students in BBS labs:

Bashore C, Dambacher CM, Goodall EA, Matyskiela ME, Lander GC, et al. (2015) Ubp6 deubiquitinase controls conformational dynamics and substrate degradation of the 26S proteasome. Nature structural & molecular biology. 22(9):712-9.

Gonzaelz TL, Liang Y, Nguyen BN, Staskawicz BJ, Loqué D, et al. (2015) Tight regulation of plant immune responses by combining promoter and suicide exon elements. Nucleic acids research. 43(14):7152-61

Hochstrasser ML, Doudna JA. (2015) Cutting it close: CRISPR-associated endoribonuclease structure and function. Trends Biochem Sci.40(1):58-66.

Kline BC, McKay SL, Tang WW, Portnoy DA. (2015) The Listeria monocytogenes hibernation-promoting factor is required for the formation of 100S ribosomes, optimal fitness, and pathogenesis. J Bacteriol.197(3):581

Koulechova DA, Tripp KW, Hoerner G, Marquesee S. (2015) When the Scaffold Cannot Be Ignored: The Role of the Hydrophobic Core in Ligand Binding and Specificity. J Mol Biol427(20):3316-26-91.

Nuñez JK, Harrington LB, Kranzusch PJ, Engelman AN, Doudna JA. (2015) Foreign DNA capture during CRISPR-Cas adaptive immunity. Nature. 527(7579):535-8.

Visperas PR, Winger JA, Horton TM, Shah NH, Aum DJ, et al. (2015) Modification by covalent reaction or oxidation of cysteine residues in the tandem-SH2 domains of ZAP-70 and Syk can block phosphopeptide binding. The Biochemical journal. 401(2):310-23.

Vogan JM, Collins K. (2015) Dynamics of Human Telomerase Holoenzyme Assembly and Subunit Exchange across the Cell Cycle. The Journal of biological chemistry.290(35):21320-35.

Wright AV, Nuñez JK, Doudna J. (2015) Biology and Applications of CRISPR Systems: Harnessing Nature's Toolbox for Genome Engineering. Cell. 164(1-2):29-44.

Wright AV, Sternburg SH, Taylor DW, Staahl BT, Bardales JA, Kornfeld JE, Doudna JA. (2015) Rational design of a split-Cas9 enzyme complex. Proc Natl Acad Sci. 112(10):2984-9.

Wu RA, Dagdas YS, Yilmaz ST, Yildaz A, Collins K. (2015) Single-molecule imaging of telomerase reverse transcriptase in human telomerase holoenzyme and minimal RNP complexes. eLife. 4.

Zhang ET, He Y, Grob P, Fong YW, Nogales E, Tijan R. (2015) Architecture of the human XPC DNA repair and stem cell coactivator complex . Proc Natl Acad Sci U S A. 112(48):14817-22.

A selection of papers published by MCB graduate students in CDB labs:

Bosch JA, Tran NH, Hariharan IK. (2015) CoinFLP: a system for efficient mosaic screening and for visualizing clonal boundaries in Drosophila. Development (Cambridge, England). 142(3):597-606.

Bunker BD, Nellimoottil TT, Boileau RM, Classen AK, Bilder D. (2015) The transcriptional response to tumorigenic polarity loss in Drosophila. eLife. 4.

Chiba K, Hockemeyer D. (2015) Genome editing in human pluripotent stem cells using site-specific nucleases. Methods in molecular biology (Clifton, N.J.). 1239:267-80.

Chiba K, Johnson JZ, Vogan JM, Wagner T, Boyle JM, et al. (2015) Cancer-associated TERT promoter mutations abrogate telomerase silencing. eLife. 4.

Johnson JZ, Hockemeyer D. (2015) Human stem cell-based disease modeling: prospects and challenges. Current opinion in cell biology37:84-90.

Krefman NI, Drubin DG. (2015) Control of the spindle checkpoint by lateral kinetochore attachment and limited Mad1 recruitment. Mol Biol Cell26(14):2620-39.

Miller KE, Heald R. (2015) Glutamylation of Nap1 modulates histone H1 dynamics and chromosome condensation in Xenopus. The Journal of cell biology209(2):211-20.

Morita T, McClain SP, Batia LM, Pellegrino M, Wilson SR, et al. (2015) HTR7 Mediates Serotonergic Acute and Chronic Itch. Neuron87(1):124-38.

Walsh CM, Bautista D, Lumpkin EA. (2015) Mammalian touch catches up. Current opinion in neurobiology34:133-9.