Matthew Welch

Matthew Welch

Professor of Cell and Developmental Biology*
*And Member, Graduate Group in Infectious Diseases and Immunity

Lab Homepage: http://mcb.berkeley.edu/labs/welch/

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Research Interests

The ability to change shape and to move is critical for the function of cell types ranging from single celled amoeba to immune cells and neurons. We are studying the engine that powers cell shape change and migration, the actin cytoskeleton, using a combination of cell biological, biochemical and genetic techniques. In particular, we are working to determine how actin filament assembly is initiated, how it is regulated by signal transduction pathways, and how it functions during processes such as whole cell migration and intracellular membrane trafficking.  Moreover, we are working to understand how different bacterial and viral pathogens target the actin cytoskeleton of host cells to promote pathogen internalization, replication and spread during infection.

Current Projects

Regulation of actin assembly. One key control point in actin assembly is the initiation of new filament formation by a processes called nucleation. Work from our lab and others has established that the Arp2/3 complex, an evolutionarily conserved protein complex, is a critical actin nucleating factor that functions to generate new actin filaments and organize them into Y-branched networks.  Importantly, the Arp2/3 complex does not function alone, and its activity is regulated by proteins called nucleation promoting factors (NPFs). Cells contain several families of NPFs, and we are working to understanding how these regulate the formation of diverse actin-containing structures within the cell. Our current emphasis is on new nucleation promoting factors we have discovered that function in membrane trafficking pathways.

Cell migration. Many cells, including human neutrophils, undergo chemotaxis towards attractant molecules in the environment.  Coordinating chemotaxis requires the precise spatial and temporal regulation of the actin cytoskeleton. At the front or leading edge of the cell, actin filament assembly drives membrane protrusion and mediates the initial stages of movement. At the rear or trailing edge, actin and myosin mediated contraction pulls the cell body forward to follow the front. We are using human neutrophil-like cells as a model to understand how membrane lipids and signal transduction proteins control actin cytoskeleton organization during cell polarization and migration.

Interaction between pathogens and the host actin cytoskeleton. An amazing variety of bacterial and viral pathogens target the actin cytoskeleton of host cells during infection. By studying the interaction between these diverse pathogens and actin, we hope to gain insights into mechanisms of pathogenesis as well as the normal functions of the cytoskeleton.  We are working with two pathogens in particular. One is the spotted fever group of Rickettsia species, which are the causative agents of diseases such as Rocky Mountain spotted fever. These bacteria are internalized into the cytoplasm of host cells where they induce actin polymerization at their surface and use the energy derived from polymerization to power intracellular motility and cell to cell spread.  Rickettsia appear to have evolved a mechanism of polymerizing and organizing actin that is distinct from other pathogens and may shed light on mechanisms for regulating actin assembly during processes such as filopodia formation. The other pathogens we are focusing on are baculoviruses, which infect lepidopteran insects. Baculoviruses induce actin polymerization in the cytoplasm of infected cells early in infection, and most intriguingly, promote actin translocation and polymerization within the nucleus late in infection to facilitate viral replication. We are working to understand how baculoviruses use actin in the nucleus as a window into understanding the cellular function and regulation of nuclear actin.

Developing drugs that target the cytoskeleton of parasites. Parasites called trypanosomes cause neglected diseases affecting millions of the poorest people in the world.  Because they rely on the cytoskeleton to complete essential processes such as cell division, they are potentially vulnerable to attack by drugs that target cytoskeletal proteins.  We are working to identify a new class of anti-trypanosomal agents that targeting kinesins and myosins, large superfamilies of molecular motor proteins that function to move cargo along cytoskeletal filaments.  We are pursuing a multidisciplinary strategy that includes a chemical biology approach to isolate inhibitors of motor protein activity, molecular/structural approaches to understand molecular-level vulnerabilities of motors, cellular approaches to analyze the basic processes that require motor function, and proteomic approaches to build a complete index of molecular components that may be vulnerable to attack.  Our goal is to identify lead compounds to pursue in drug development efforts.

 

Selected Publications

WHAMM is an Arp2/3 complex activator that binds microtubules and functions in ER to Golgi transport. [K. G. Campellone, N. J. Webb, E. A. Znameroski, M. D. Welch (2008) Cell 134, 148-161]

Dynamic nuclear actin assembly by Arp2/3 complex and a baculovirus WASP-like protein. [E. D. Goley, T. Ohkawa, J. Mancuso, J. B. Woodruff, J. A. D'Alessio, W. Z. Cande, L. E. Volkman and M. D. Welch (2006) Science 314, 464-467]

The Arp2/3 complex: an actin nucleator comes of age. [E. D. Goley and M. D. Welch (2006) Nat. Rev. Mol. Cell Biol. 7, 713-726]

Plasma membrane organization is essential for balancing competing pseudopod- and uropod-promoting signals during neutrophil polarization and migration. [S. Bodin and M. D. Welch (2005) Mol. Biol. Cell. 16, 5773-5783]

Critical conformational changes in the Arp2/3 complex are induced by nucleotide and nucleation promoting factor. [E. D. Goley, S. E. Rodenbusch, A. C. Martin and M. D. Welch (2004) Mol. Cell 16, 269-279]

A Rickettsia WASP-like protein activates the Arp2/3 complex and mediates actin-based motility. [R. L. Jeng, E. D. Goley, J. A. D'Alessio, O. Y. Chaga, T. M. Svitkina, G. G Borisy, R. A. Heinzen and M. D. Welch (2004) Cell. Microbiol. 6, 761-769]

Motility determinants in WASP family proteins. [D. Yarar, J. A. D'Alessio, R. L. Jeng and M. D. Welch (2002) Mol. Biol. Cell 13, 4045-4059]

Cellular control of actin nucleation. [M. D. Welch and R. D. Mullins (2002) Annu. Rev Cell Dev. Biol. 18, 247-288]

Last Updated 2008-07-23